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| 1 | <?xml version='1.0'?> |
| 2 | <!DOCTYPE html PUBLIC "-//XML-DEV//DTD XHTML RDDL 1.0//EN" "http://www.w3.org/2001/rddl/rddl-xhtml.dtd" > |
| 3 | <html xmlns="http://www.w3.org/1999/xhtml" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:rddl="http://www.rddl.org/" xml:lang="en"> |
| 4 | <head> |
| 5 | <title>Open Microscopy Environment Schemas</title> |
| 6 | </head> |
| 7 | <body> |
| 8 | <h1>Open Microscopy Environment Schemas</h1> |
| 9 | <div class="head"> |
| 10 | <p>21st May 2008</p> |
| 11 | </div> |
| 12 | <div id="toc"> |
| 13 | <h2>Table of contents</h2> |
| 14 | <ol> |
| 15 | <li><a href="#intro">Introduction</a></li> |
| 16 | <li><a href="#history">History</a></li> |
| 17 | <li><a href="#schema.list">Schemas</a></li> |
| 18 | </ol> |
| 19 | </div> |
| 20 | <div id="intro"> |
| 21 | <h2>Introduction</h2> |
| 22 | <p>This document outlines the XML Schemas created by the Open Microscopy Environment Group. Detailed information on the schemas and future development plans are available at <a href="http://www.ome-xml.org/">http://www.ome-xml.org/</a>. Further information on the groups work is available at <a href="http://www.openmicroscopy.org/">http://www.openmicroscopy.org/</a> |
| 23 | </p> |
| 24 | <p>Auto generated documentation for the schemas is is available on the development server: <a href="http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-02/ome.xsd.html">http://cvs.openmicroscopy.org.uk/svn/specification/Documentation/Generated/OME-2008-02/ome.xsd.html</a> |
| 25 | </p> |
| 26 | </div> |
| 27 | <div id="history"> |
| 28 | <h2>History</h2> |
| 29 | <p>This document describes the current XML Schemas using the current version scheme. |
| 30 | </p> |
| 31 | <ul> |
| 32 | <li>June 2007 - Major release - new namespace /2007-06/</li> |
| 33 | <li>September 2007 - Minor release - version number increment</li> |
| 34 | <li>February 2008 - Major release - new namespace /2008-02/</li> |
| 35 | <li>May 2008 - Minor release - version number increment</li> |
| 36 | </ul> |
| 37 | <p>For information on the schemas released before June 2007 is available at <a href="http://www.openmicroscopy.org/XMLschemas/">http://www.openmicroscopy.org/XMLschemas/</a>. This includes the schemas used by the original OME server. |
| 38 | </p> |
| 39 | </div> |
| 40 | <div id="schema.list"> |
| 41 | <h2>Schemas</h2> |
| 42 | <p>This has the schema name, the current version, a link to the XSD file, and a short description</p> |
| 43 | <ul> |
| 44 | <li>AnalysisChain - February 2008 Version 1 [<a href="AnalysisChain/2008-02/AnalysisChain.xsd">AnalysisChain.xsd</a>] The Analysis Chain schema. Analysis chains are how module outputs are connected to inputs of other modules.</li> |
| 45 | <li>AnalysisModule - February 2008 Version 1 [<a href="AnalysisModule/2008-02/AnalysisModule.xsd">AnalysisModule.xsd</a>] The Analysis Module Library schema. Analysis modules are image analysis algorithms or, more generally, how information is generated in OME. Makes use of CLI and MLI schemas.</li> |
| 46 | <li>BinaryFile - February 2008 Version 1 [<a href="BinaryFile/2008-02/BinaryFile.xsd">BinaryFile.xsd</a>] The Binary File schema is used to describes a file location, or the location of a fragment within a file.</li> |
| 47 | <li>CA - February 2008 Version 1 [<a href="CA/2008-02/CA.xsd">CA.xsd</a>] The standard custom attribute schema.</li> |
| 48 | <li>CLI - September 2008 Version 1 [<a href="CLI/2008-02/CLI.xsd">CLI.xsd</a>] The Command Line Interface sub-schema.</li> |
| 49 | <li>DataHistory - February 2008 Version 1 [<a href="DataHistory/2008-02/DataHistory.xsd">DataHistory.xsd</a>] The Data History schema. Data history describes the data dependency in OME.</li> |
| 50 | <li>MLI - February 2008 Version 1 [<a href="MLI/2008-02/MLI.xsd">MLI.xsd</a>] The Matlab Interface sub-schema.</li> |
| 51 | <li>OME - February 2008 Version 2 [<a href="OME/2008-02/ome.xsd">ome.xsd</a>] The main schema which defines the OME ontology for microscopy. This schema makes use of all of the others.</li> |
| 52 | <li>SPW - February 2008 Version 1 [<a href="SPW/2008-02/SPW.xsd">SPW.xsd</a>] Short Description</li> |
| 53 | <li>STD - February 2008 Version 1 [<a href="STD/2008-02/STD.xsd">STD.xsd</a>] The Semantic Type definition schema. Once a Semantic Type is defined, data for the defined type can be imported into the OME server.</li> |
| 54 | </ul> |
| 55 | <p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> |
| 56 | </div> |
| 57 | <hr/> |
| 58 | </body> |
| 59 | </html> |
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