root/Xml/Working/roi-sa-sample.xml
| Revision 197, 6.9 kB (checked in by andrew, 4 months ago) |
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| 1 | <?xml version="1.0" encoding="UTF-8"?> |
| 2 | <ome:OME |
| 3 | xmlns:bf="http://www.openmicroscopy.org/Schemas/BinaryFile/2008-02" |
| 4 | xmlns:ome="http://www.openmicroscopy.org/Schemas/OME/2008-02" |
| 5 | xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" |
| 6 | xmlns:sa="http://www.openmicroscopy.org/Schemas/SA/2008-02" |
| 7 | xmlns:omero="http://www.openmicroscopy.org/Schemas/OMERO/2008-02" |
| 8 | xsi:schemaLocation="http://www.openmicroscopy.org/Schemas/OME/2008-02 ome-roi-sa.xsd http://www.openmicroscopy.org/Schemas/SA/2008-02 SA.xsd http://www.openmicroscopy.org/Schemas/OMERO/2008-02 OMERO.xsd" |
| 9 | > |
| 10 | <ome:Image ID="Image:1" Name="Name92" DefaultPixels="Pixels:b"> |
| 11 | <ome:CreationDate>2008-03-04T14:17:43.0Z</ome:CreationDate> |
| 12 | <ome:Pixels ID="Pixels:a" DimensionOrder="XYZCT" PixelType="int8" BigEndian="false" SizeX="2" SizeY="2" SizeZ="2" SizeC="2" SizeT="2"> |
| 13 | <bf:BinData Compression="none" Length="12">ZGVmYXVsdA==</bf:BinData> |
| 14 | </ome:Pixels> |
| 15 | <ome:ROI ID="ROI:1"> |
| 16 | <ome:Union> |
| 17 | <ome:Shape ID="Shape:1"> |
| 18 | <ome:Channels> |
| 19 | <ome:LogicalChannelRef ID="LogicalChannel:1"/> |
| 20 | <ome:LogicalChannelRef ID="LogicalChannel:2"/> |
| 21 | </ome:Channels> |
| 22 | <ome:Point cx="1" cy="2" transform="matrix(1 2 3 4 5 6)"/> |
| 23 | </ome:Shape> |
| 24 | <ome:Shape ID="Shape:2"> |
| 25 | <ome:Circle cx="1" cy="2" r="5" transform="matrix(1 2 3 4 5 6)"/> |
| 26 | </ome:Shape> |
| 27 | <ome:Shape ID="Shape:3"> |
| 28 | <ome:Ellipse cx="1" cy="2" rx="3" ry="4" transform="matrix(1 2 3 4 5 6)"/> |
| 29 | </ome:Shape> |
| 30 | <ome:Shape ID="Shape:4" theT="1"> |
| 31 | <ome:Line x1="1" x2="2" y1="3" y2="4" transform="matrix(1 2 3 4 5 6)"/> |
| 32 | </ome:Shape> |
| 33 | <ome:Shape ID="Shape:5" theZ="1"> |
| 34 | <ome:Rect x="1" y="2" width="3" height="4" transform="matrix(1 2 3 4 5 6)"/> |
| 35 | </ome:Shape> |
| 36 | <ome:Shape ID="Shape:6" theT="1" theZ="1"> |
| 37 | <ome:Mask x="1" y="2" width="3" height="4" transform="matrix(1 2 3 4 5 6)" > |
| 38 | <ome:MaskPixels ExtendedPixelType="bit" BigEndian="true" SizeX="20" SizeY="20"> |
| 39 | <bf:BinData Compression="none" Length="12">ZGVmYXVsdA==</bf:BinData> |
| 40 | </ome:MaskPixels> |
| 41 | </ome:Mask> |
| 42 | </ome:Shape> |
| 43 | <ome:Shape ID="Shape:7"> |
| 44 | <ome:Polygon points="582.551,70.325 542.271,81.118 512.783,51.631 523.576,11.351 563.856,0.558 593.344,30.045 " transform="matrix(1 2 3 4 5 6)"/> |
| 45 | </ome:Shape> |
| 46 | <ome:Shape ID="Shape:8"> |
| 47 | <ome:Polyline points="582.551,70.325 542.271,81.118 512.783,51.631 523.576,11.351 563.856,0.558 593.344,30.045 " transform="matrix(1 2 3 4 5 6)"/> |
| 48 | </ome:Shape> |
| 49 | </ome:Union> |
| 50 | </ome:ROI> |
| 51 | </ome:Image> |
| 52 | <sa:StructuredAnnotations> |
| 53 | <sa:FileAnnotation ID="Annotation:1" Namespace="ome:omero:attachment:file"> |
| 54 | <sa:Link>Shape:5</sa:Link> |
| 55 | <sa:FileName>file.txt</sa:FileName> |
| 56 | <sa:MimeType>text/plain</sa:MimeType> |
| 57 | <bf:BinData Compression="none" Length="12">ZGVmYXVsdA==</bf:BinData> |
| 58 | </sa:FileAnnotation> |
| 59 | <sa:FileAnnotation ID="Annotation:2" Namespace="ome:omero:attachment:file"> |
| 60 | <sa:Link>Image:1</sa:Link> |
| 61 | <sa:FileName>report.pdf</sa:FileName> |
| 62 | <sa:MimeType>application/pdf</sa:MimeType> |
| 63 | <sa:ExternalFile>roi-sample-annotations/report.pdf</sa:ExternalFile> |
| 64 | </sa:FileAnnotation> |
| 65 | <sa:XmlAnnotation ID="Annotation:3" Namespace="ome:omero:insight:roi:svg"> |
| 66 | <sa:Link>Shape:5</sa:Link> |
| 67 | <sa:Link>Shape:4</sa:Link> |
| 68 | <sa:Link>Shape:3</sa:Link> |
| 69 | <sa:Link>Shape:2</sa:Link> |
| 70 | <sa:Value> |
| 71 | <omero:RoiDisplay |
| 72 | fill-opacity="0.25098039215686274" fill-rule="evenodd" |
| 73 | stroke="#c4c4c4" stroke-dashoffset="0" stroke-linecap="butt" |
| 74 | stroke-linejoin="miter" stroke-miterlimit="3" |
| 75 | stroke-opacity="0.7686274509803922" stroke-width="1" |
| 76 | /> |
| 77 | </sa:Value> |
| 78 | </sa:XmlAnnotation> |
| 79 | <sa:XmlAnnotation ID="Annotation:4" Namespace="ome:omero:insight:roi:svg"> |
| 80 | <sa:Link>Shape:1</sa:Link> |
| 81 | <sa:Value> |
| 82 | <omero:RoiDisplay |
| 83 | fill="#c4c4c4" fill-opacity="0.7686274509803922" |
| 84 | font-family="Verdana" font-size="12" font-style="normal" |
| 85 | font-variant="normal" font-weight="normal" |
| 86 | /> |
| 87 | </sa:Value> |
| 88 | </sa:XmlAnnotation> |
| 89 | <sa:FileAnnotation ID="Annotation:5" Namespace="ome:omero:attachment:origionalfile"> |
| 90 | <sa:Link>Shape:5</sa:Link> |
| 91 | <sa:FileName>origionalfile.dcm</sa:FileName> |
| 92 | <sa:MimeType>application/dicom</sa:MimeType> |
| 93 | <sa:ExternalFile>roi-sample-annotations/origionalfile.dcm</sa:ExternalFile> |
| 94 | </sa:FileAnnotation> |
| 95 | <sa:BooleanAnnotation ID="Annotation:6" Namespace="ome:omero:render:noise-filter"> |
| 96 | <sa:Link>Image:1</sa:Link> |
| 97 | <sa:Value>true</sa:Value> |
| 98 | </sa:BooleanAnnotation> |
| 99 | <sa:DoubleAnnotation ID="Annotation:7" Namespace="ome:omero:render:gamma"> |
| 100 | <sa:Link>Image:1</sa:Link> |
| 101 | <sa:Value>4.2</sa:Value> |
| 102 | </sa:DoubleAnnotation> |
| 103 | <sa:ListAnnotation ID="Annotation:8" Namespace="ome:omero:roi:svg-list"> |
| 104 | <sa:Link>ROI:1</sa:Link> |
| 105 | <sa:List> |
| 106 | <sa:Link>Annotation:3</sa:Link> |
| 107 | <sa:Link>Annotation:4</sa:Link> |
| 108 | </sa:List> |
| 109 | </sa:ListAnnotation> |
| 110 | <sa:LongAnnotation ID="Annotation:9" Namespace="ome:omero:render:cut-off-min"> |
| 111 | <sa:Link>Image:1</sa:Link> |
| 112 | <sa:Value>42</sa:Value> |
| 113 | </sa:LongAnnotation> |
| 114 | <sa:LongAnnotation ID="Annotation:10" Namespace="ome:omero:render:cut-off-max"> |
| 115 | <sa:Link>Image:1</sa:Link> |
| 116 | <sa:Value>204</sa:Value> |
| 117 | </sa:LongAnnotation> |
| 118 | <sa:StringAnnotation ID="Annotation:11" Namespace="ome:omero:attachment:url"> |
| 119 | <sa:Link>Image:1</sa:Link> |
| 120 | <sa:Value>http://www.ome-xml.org/</sa:Value> |
| 121 | </sa:StringAnnotation> |
| 122 | <sa:TimestampAnnotation ID="Annotation:12" Namespace="ome:omero:insight:last-viewed"> |
| 123 | <sa:Link>Image:1</sa:Link> |
| 124 | <sa:Value>2008-03-04T14:17:43.0Z</sa:Value> |
| 125 | </sa:TimestampAnnotation> |
| 126 | <sa:StringAnnotation ID="Annotation:13" Namespace="ome:omero:tag:taglist"> |
| 127 | <sa:Link>Image:1</sa:Link> |
| 128 | <sa:Value>"good image" "jcb paper" "Figure 1"</sa:Value> |
| 129 | </sa:StringAnnotation> |
| 130 | <sa:XmlAnnotation ID="Annotation:14" Namespace="ome:omero:profile"> |
| 131 | <sa:Link>Image:1</sa:Link> |
| 132 | <sa:Value> |
| 133 | <omero:ProfileSet> |
| 134 | <omero:ImageProfile origin="User"> |
| 135 | <omero:Name></omero:Name> |
| 136 | <omero:Description></omero:Description> |
| 137 | <ome:InstrumentRef ID="Instrument:1"/> |
| 138 | <ome:ObjectiveRef ID="Objective:1"/> |
| 139 | </omero:ImageProfile> |
| 140 | <omero:ImageProfile origin="File"> |
| 141 | <omero:Name></omero:Name> |
| 142 | <omero:Description></omero:Description> |
| 143 | <ome:InstrumentRef ID="Instrument:1"/> |
| 144 | <ome:ObjectiveRef ID="Objective:2"/> |
| 145 | </omero:ImageProfile> |
| 146 | <omero:ChannelProfile origin="User"> |
| 147 | <omero:Name></omero:Name> |
| 148 | <omero:Description></omero:Description> |
| 149 | <ome:LightSourceRef ID="LightSource:1"/> |
| 150 | <ome:OTFRef ID="OTF:1"/> |
| 151 | <ome:DetectorRef ID="Detector:1"/> |
| 152 | <ome:FilterSetRef ID="FilterSet:1"/> |
| 153 | </omero:ChannelProfile> |
| 154 | <omero:ChannelProfile origin="File"> |
| 155 | <omero:Name></omero:Name> |
| 156 | <omero:Description></omero:Description> |
| 157 | <ome:LightSourceRef ID="LightSource:1"/> |
| 158 | <ome:OTFRef ID="OTF:1"/> |
| 159 | <ome:DetectorRef ID="Detector:1"/> |
| 160 | <ome:FilterSetRef ID="FilterSet:1"/> |
| 161 | </omero:ChannelProfile> |
| 162 | </omero:ProfileSet> |
| 163 | </sa:Value> |
| 164 | </sa:XmlAnnotation> |
| 165 | </sa:StructuredAnnotations> |
| 166 | </ome:OME> |
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