Changeset 155 for Schemas/OME
- Timestamp:
- 02/27/08 14:49:21 (9 months ago)
- Files:
-
- 1 modified
-
Schemas/OME/2008-02/ome.xsd (modified) (14 diffs)
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- Unmodified
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Schemas/OME/2008-02/ome.xsd
r146 r155 3 3 #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4 4 # 5 # Copyright (C) 2002-200 7Open Microscopy Environment5 # Copyright (C) 2002-2008 Open Microscopy Environment 6 6 # Massachusetts Institute of Technology, 7 7 # National Institutes of Health, … … 25 25 xmlns:SPW="http://www.openmicroscopy.org/Schemas/SPW/2008-02" 26 26 xmlns:xml="http://www.w3.org/XML/1998/namespace" 27 version=" 2"27 version="1" 28 28 elementFormDefault="qualified"> 29 29 <xsd:import namespace="http://www.openmicroscopy.org/Schemas/AnalysisModule/2008-02" schemaLocation="http://www.openmicroscopy.org/Schemas/AnalysisModule/2008-02/AnalysisModule.xsd"/> … … 36 36 <xsd:documentation> 37 37 Open Microscopy Environment 38 OME XML Schema June 2007 - Update Version 2 September 200738 OME XML Schema February 2008 - Version 1 39 39 Author: Ilya G. Goldberg, Andrew J Patterson 40 Copyright 2002 - 200 7OME. All rights reserved.40 Copyright 2002 - 2008 OME. All rights reserved. 41 41 </xsd:documentation> 42 42 </xsd:annotation> … … 65 65 <xsd:element ref="CA:CustomAttributes" minOccurs="0"/> 66 66 </xsd:sequence> 67 <xsd:attribute name="ID" type="FileID"/> 68 <xsd:attribute name="HashMethod" type="HashMethodType" default="SHA1"/> 67 <xsd:attribute name="UUID" type="UniversallyUniqueIdentifier"/> 69 68 </xsd:complexType> 70 69 </xsd:element> … … 103 102 <xsd:element ref="StageLabel" minOccurs="0"/> 104 103 <xsd:element ref="Pixels" maxOccurs="unbounded"/> 105 <xsd:element ref="AcquiredPixelsRef" minOccurs="0" maxOccurs="1"/>106 104 <xsd:element ref="Region" minOccurs="0" maxOccurs="unbounded"/> 107 105 <xsd:element ref="CA:CustomAttributes" minOccurs="0"/> … … 113 111 <xsd:attribute name="DefaultPixels" use="required" type="PixelsID"> 114 112 <xsd:annotation> 115 <xsd:documentation>More than one Pixels attribute may be associated with an Image. An Image will however have one "primary" set of Pixels. If a PixelsID is specified with this attribute, then that will be the "primary" pixels for this image. If this attribute 116 is not specified, then the FIRST <Pixels> element under <Image> will be assumed to be the "primary" set. 113 <xsd:documentation> 114 More than one Pixels element may be associated with an Image. 115 An Image will however have one "primary" set of Pixels specified with this attribute. 116 </xsd:documentation> 117 </xsd:annotation> 118 </xsd:attribute> 119 <xsd:attribute name="AcquiredPixels" type="PixelsID"> 120 <xsd:annotation> 121 <xsd:documentation> 122 Optional. 123 More than one Pixels element may be associated with an Image. 124 This attribute indicates the original acquired pixels. 117 125 </xsd:documentation> 118 126 </xsd:annotation> … … 210 218 </xsd:complexType> 211 219 </xsd:element> 212 213 <xsd:element name="AcquiredPixelsRef">214 <xsd:complexType>215 <xsd:complexContent>216 <xsd:extension base="Reference">217 <xsd:attribute name="ID" use="required" type="PixelsID"/>218 </xsd:extension>219 </xsd:complexContent>220 </xsd:complexType>221 </xsd:element>222 223 220 <xsd:element name="TiffData"> 224 221 <xsd:annotation> … … 228 225 </xsd:annotation> 229 226 <xsd:complexType> 227 <xsd:sequence> 228 <xsd:element name="UUID" minOccurs="0"> 229 <xsd:annotation> 230 <xsd:documentation> 231 This must be used when the IFDs are located in another file. 232 Note: It is permissible for this to be self referential. 233 </xsd:documentation> 234 </xsd:annotation> 235 <xsd:complexType> 236 <xsd:simpleContent> 237 <xsd:extension base = "UniversallyUniqueIdentifier"> 238 <xsd:attribute name="FileName" type="xsd:string"> 239 <xsd:annotation> 240 <xsd:documentation> 241 This can be used when the IFDs are located in another file. 242 The / (forward slash) is used as the path separator. 243 A relative path is recommended. However an absolute path can be specified. 244 Default is to use the file the ome-xml data has been pulled from. 245 Note: It is permissible for this to be self referential. The file image1.tiff 246 may contain ome-xml data that has FilePath="image1.tiff" or "./image1.tiff" 247 </xsd:documentation> 248 </xsd:annotation> 249 </xsd:attribute> 250 </xsd:extension> 251 </xsd:simpleContent> 252 </xsd:complexType> 253 </xsd:element> 254 </xsd:sequence> 230 255 <xsd:attribute name="IFD" type="xsd:integer" default="0"> 231 256 <xsd:annotation> … … 269 294 </xsd:annotation> 270 295 </xsd:attribute> 271 <xsd:attribute name="FilePath" type="xsd:string">272 <xsd:annotation>273 <xsd:documentation>274 This is used when the IFDs are located in another file.275 The / (forward slash) is used as the path separator.276 A relative path is recommended. However an absolute path can be specified.277 Default is to use the file the ome-xml data has been pulled from.278 Note: It is permissible for this to be self referential. The file image1.tiff279 may contain ome-xml data that has FilePath="image1.tiff" or "./image1.tiff"280 </xsd:documentation>281 </xsd:annotation>282 </xsd:attribute>283 296 </xsd:complexType> 284 297 </xsd:element> … … 293 306 <xsd:element name="PlaneTiming" type="PlaneTiming" minOccurs="0" maxOccurs="1"/> 294 307 <xsd:element name="StagePosition" type="StagePosition" minOccurs="0" maxOccurs="1"/> 308 <xsd:choice minOccurs="0" maxOccurs="1"> 309 <xsd:annotation> 310 <xsd:documentation> 311 This optional element is a hash of the plane's image data. 312 It is a choice between all the support hash types. 313 Currently the only method supported is SHA1. 314 </xsd:documentation> 315 </xsd:annotation> 316 <xsd:element name="HashSHA1" type="Hex40"/> 317 </xsd:choice> 295 318 </xsd:sequence> 296 319 <xsd:attribute name="TheZ" use="required" type="xsd:integer"/> 297 320 <xsd:attribute name="TheT" use="required" type="xsd:integer"/> 298 321 <xsd:attribute name="TheC" use="required" type="xsd:integer"/> 299 <xsd:attribute name="Hash" type="HashValue">300 <xsd:annotation>301 <xsd:documentation>302 This optional value is a hash of the plane's image data.303 It is calculated using the method set in the HashMethod of the OME element.304 Currently the only method supported is SHA1.305 </xsd:documentation>306 </xsd:annotation>307 </xsd:attribute>308 322 </xsd:complexType> 309 323 </xsd:element> … … 911 925 </xsd:annotation> 912 926 </xsd:element> 913 <xsd:element name="Correction" type="Correction">927 <xsd:element name="Correction"> 914 928 <xsd:annotation> 915 929 <xsd:documentation>The coating applied to the lens</xsd:documentation> 916 930 </xsd:annotation> 917 </xsd:element>918 <xsd:simpleType name="Correction">919 <xsd:restriction base="xsd:string">920 <xsd:enumeration value="UV"/>921 <xsd:enumeration value="PlanApo"/>922 <xsd:enumeration value="PlanFluor"/>923 <xsd:enumeration value="SuperFluor"/>924 < xsd:enumeration value="VioletCorrected"/>925 </xsd: restriction>926 </xsd: simpleType>927 <xsd:element name="Immersion" type="Immersion">931 <xsd:simpleType> 932 <xsd:restriction base="xsd:string"> 933 <xsd:enumeration value="UV"/> 934 <xsd:enumeration value="PlanApo"/> 935 <xsd:enumeration value="PlanFluor"/> 936 <xsd:enumeration value="SuperFluor"/> 937 <xsd:enumeration value="VioletCorrected"/> 938 </xsd:restriction> 939 </xsd:simpleType> 940 </xsd:element> 941 <xsd:element name="Immersion"> 928 942 <xsd:annotation> 929 943 <xsd:documentation>The immersion medium the lens is designed for</xsd:documentation> 930 944 </xsd:annotation> 931 </xsd:element>932 <xsd:simpleType name="Immersion">933 <xsd:restriction base="xsd:string">934 <xsd:enumeration value="Oil"/>935 <xsd:enumeration value="Water"/>936 <xsd:enumeration value="WaterDipping"/>937 <xsd:enumeration value="Air"/>938 <xsd:enumeration value="Multi"/>939 <xsd:enumeration value="Glycerol"/>940 < xsd:enumeration value="Other"/>941 </xsd: restriction>942 </xsd: simpleType>945 <xsd:simpleType> 946 <xsd:restriction base="xsd:string"> 947 <xsd:enumeration value="Oil"/> 948 <xsd:enumeration value="Water"/> 949 <xsd:enumeration value="WaterDipping"/> 950 <xsd:enumeration value="Air"/> 951 <xsd:enumeration value="Multi"/> 952 <xsd:enumeration value="Glycerol"/> 953 <xsd:enumeration value="Other"/> 954 </xsd:restriction> 955 </xsd:simpleType> 956 </xsd:element> 943 957 <xsd:element name="WorkingDistance" type="xsd:float"> 944 958 <xsd:annotation> … … 1096 1110 </xsd:restriction> 1097 1111 </xsd:simpleType> 1098 <xsd:simpleType name="HashValue">1099 <xsd:union memberTypes="Hex40"/>1100 </xsd:simpleType>1101 <xsd:simpleType name="HashMethodType">1102 <xsd:restriction base="xsd:string">1103 <xsd:enumeration value="SHA1"/>1104 </xsd:restriction>1105 </xsd:simpleType>1106 1112 <xsd:simpleType name="MetalVaporLaserMedia"> 1107 1113 <xsd:restriction base="xsd:string"> … … 1185 1191 </xsd:restriction> 1186 1192 </xsd:simpleType> 1187 <xsd:simpleType name=" FileID">1188 <xsd:annotation> 1189 <xsd:documentation> 1190 Note: Thisdoes not conform to the ID pattern used in the rest of the file.1193 <xsd:simpleType name="UniversallyUniqueIdentifier"> 1194 <xsd:annotation> 1195 <xsd:documentation> 1196 This is a unique ID for the file but does not conform to the ID pattern used in the rest of the file. 1191 1197 The rest of the IDs are either an full LSID or an internal ID which is a string that is simply unique in this file. 1192 As the FileID is used from outside this file to identify it having the same ID in another file could cause problems. 1193 To resolve this a FileID can either be an LSID or a UUID. 1198 As the UniversallyUniqueIdentifier is used from outside this file to identify it having the same ID in another file could cause problems. 1194 1199 A UUID is 32 hexadecimal digits, in 5 groups, 8-4-4-4-12, separated by hyphens 1195 e.g. 3e450fae-b8f2-4d35-aa54-702168b2487f1200 e.g. urn:uuid:3e450fae-b8f2-4d35-aa54-702168b2487f 1196 1201 There are methods to generate these in most modern languages. 1197 </xsd:documentation> 1198 </xsd:annotation> 1199 <xsd:restriction base="LSID"> 1200 <xsd:pattern value="(urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:File:\S+)|(File:\S+)"/> 1202 http://www.ietf.org/rfc/rfc4122.txt 1203 </xsd:documentation> 1204 </xsd:annotation> 1205 <xsd:restriction base="xsd:anyURI"> 1206 <xsd:pattern value="(urn:uuid:[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12})"/> 1201 1207 </xsd:restriction> 1202 1208 </xsd:simpleType> … … 1321 1327 <xsd:simpleType> 1322 1328 <xsd:restriction base="xsd:string"> 1323 <xsd:enumeration value ="bit"/>1324 <xsd:enumeration value = "double"/>1325 <xsd:enumeration value = "complex"/>1326 <xsd:enumeration value = "double-complex"/>1329 <xsd:enumeration value = "bit"/> 1330 <xsd:enumeration value = "double"/> 1331 <xsd:enumeration value = "complex"/> 1332 <xsd:enumeration value = "double-complex"/> 1327 1333 </xsd:restriction> 1328 1334 </xsd:simpleType>
