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Changeset 189

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Timestamp:
07/01/08 15:52:04 (2 months ago)
Author:
andrew
Message:

Minor changes to text in the index pages.

Files:
27 modified

  • Schemas/AnalysisChain/2007-06/index.html (modified) (1 diff)
  • Schemas/AnalysisChain/2008-02/index.html (modified) (1 diff)
  • Schemas/AnalysisModule/2007-06/index.html (modified) (1 diff)
  • Schemas/AnalysisModule/2008-02/index.html (modified) (1 diff)
  • Schemas/BinaryFile/2007-06/index.html (modified) (1 diff)
  • Schemas/BinaryFile/2008-02/index.html (modified) (1 diff)
  • Schemas/CA/2007-06/index.html (modified) (1 diff)
  • Schemas/CA/2008-02/index.html (modified) (1 diff)
  • Schemas/CLI/2007-06/index.html (modified) (1 diff)
  • Schemas/CLI/2008-02/index.html (modified) (1 diff)
  • Schemas/DataHistory/2007-06/index.html (modified) (1 diff)
  • Schemas/DataHistory/2008-02/index.html (modified) (1 diff)
  • Schemas/Editor/2008-04/index.html (modified) (1 diff)
  • Schemas/MLI/2007-06/index.html (modified) (1 diff)
  • Schemas/MLI/2008-02/index.html (modified) (1 diff)
  • Schemas/OME/2007-06/index.html (modified) (1 diff)
  • Schemas/OME/2008-02/index.html (modified) (1 diff)
  • Schemas/SPW/2007-06/index.html (modified) (1 diff)
  • Schemas/SPW/2008-02/index.html (modified) (1 diff)
  • Schemas/STD/2007-06/index.html (modified) (1 diff)
  • Schemas/STD/2008-02/index.html (modified) (1 diff)
  • Schemas/index.html (modified) (1 diff)
  • Xml/Working/SPW.xsd (modified) (1 diff)
  • Xml/Working/STD.xsd (modified) (1 diff)
  • Xml/Working/min-sample.xml (modified) (1 diff)
  • Xml/Working/ome.xsd (modified) (8 diffs)
  • Xml/Working/omeOxySvnProject.xpr (modified) (1 diff)

Legend:

Unmodified
Added
Removed

  • Schemas/AnalysisChain/2007-06/index.html

    r162 r189  
    3131<h2>Schema</h2> 
    3232<p>The schema XSD file is <a href="AnalysisChain.xsd">AnalysisChain.xsd</a>.</p> 
     33<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    3334</div> 
    3435<hr/> 

  • Schemas/AnalysisChain/2008-02/index.html

    r146 r189  
    3131<h2>Schema</h2> 
    3232<p>The schema XSD file is <a href="AnalysisChain.xsd">AnalysisChain.xsd</a>.</p> 
     33<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    3334</div> 
    3435<hr/> 

  • Schemas/AnalysisModule/2007-06/index.html

    r162 r189  
    3131<h2>Schema</h2> 
    3232<p>The schema XSD file is <a href="AnalysisModule.xsd">AnalysisModule.xsd</a>.</p> 
     33<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    3334</div> 
    3435<hr/> 

  • Schemas/AnalysisModule/2008-02/index.html

    r149 r189  
    3131<h2>Schema</h2> 
    3232<p>The schema XSD file is <a href="AnalysisModule.xsd">AnalysisModule.xsd</a>.</p> 
     33<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    3334</div> 
    3435<hr/> 

  • Schemas/BinaryFile/2007-06/index.html

    r162 r189  
    3131<h2>Schema</h2> 
    3232<p>The schema XSD file is <a href="BinaryFile.xsd">BinaryFile.xsd</a>.</p> 
     33<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    3334</div> 
    3435<hr/> 

  • Schemas/BinaryFile/2008-02/index.html

    r149 r189  
    3131<h2>Schema</h2> 
    3232<p>The schema XSD file is <a href="BinaryFile.xsd">BinaryFile.xsd</a>.</p> 
     33<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    3334</div> 
    3435<hr/> 

  • Schemas/CA/2007-06/index.html

    r162 r189  
    3131<h2>Schema</h2> 
    3232<p>The schema XSD file is <a href="CA.xsd">CA.xsd</a>.</p> 
     33<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    3334</div> 
    3435<hr/> 

  • Schemas/CA/2008-02/index.html

    r146 r189  
    3131<h2>Schema</h2> 
    3232<p>The schema XSD file is <a href="CA.xsd">CA.xsd</a>.</p> 
     33<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    3334</div> 
    3435<hr/> 

  • Schemas/CLI/2007-06/index.html

    r162 r189  
    3131<h2>Schema</h2> 
    3232<p>The schema XSD file is <a href="CLI.xsd">CLI.xsd</a>.</p> 
     33<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    3334</div> 
    3435<hr/> 

  • Schemas/CLI/2008-02/index.html

    r149 r189  
    3131<h2>Schema</h2> 
    3232<p>The schema XSD file is <a href="CLI.xsd">CLI.xsd</a>.</p> 
     33<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    3334</div> 
    3435<hr/> 

  • Schemas/DataHistory/2007-06/index.html

    r162 r189  
    3131<h2>Schema</h2> 
    3232<p>The schema XSD file is <a href="DataHistory.xsd">DataHistory.xsd</a>.</p> 
     33<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    3334</div> 
    3435<hr/> 

  • Schemas/DataHistory/2008-02/index.html

    r146 r189  
    3131<h2>Schema</h2> 
    3232<p>The schema XSD file is <a href="DataHistory.xsd">DataHistory.xsd</a>.</p> 
     33<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    3334</div> 
    3435<hr/> 

  • Schemas/Editor/2008-04/index.html

    r169 r189  
    3131<h2>Schema</h2> 
    3232<p>The schema XSD file is <a href="editor.xsd">editor.xsd</a>.</p> 
     33<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    3334</div> 
    3435<hr/> 

  • Schemas/MLI/2007-06/index.html

    r162 r189  
    3131<h2>Schema</h2> 
    3232<p>The schema XSD file is <a href="MLI.xsd">MLI.xsd</a>.</p> 
     33<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    3334</div> 
    3435<hr/> 

  • Schemas/MLI/2008-02/index.html

    r149 r189  
    3131<h2>Schema</h2> 
    3232<p>The schema XSD file is <a href="MLI.xsd">MLI.xsd</a>.</p> 
     33<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    3334</div> 
    3435<hr/> 

  • Schemas/OME/2007-06/index.html

    r162 r189  
    3131<h2>Schema</h2> 
    3232<p>The schema XSD file is <a href="ome.xsd">ome.xsd</a>.</p> 
     33<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    3334</div> 
    3435<hr/> 

  • Schemas/OME/2008-02/index.html

    r176 r189  
    3131<h2>Schema</h2> 
    3232<p>The schema XSD file is <a href="ome.xsd">ome.xsd</a>.</p> 
     33<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    3334</div> 
    3435<hr/> 

  • Schemas/SPW/2007-06/index.html

    r162 r189  
    3131<h2>Schema</h2> 
    3232<p>The schema XSD file is <a href="SPW.xsd">SPW.xsd</a>.</p> 
     33<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    3334</div> 
    3435<hr/> 

  • Schemas/SPW/2008-02/index.html

    r149 r189  
    3131<h2>Schema</h2> 
    3232<p>The schema XSD file is <a href="SPW.xsd">SPW.xsd</a>.</p> 
     33<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    3334</div> 
    3435<hr/> 

  • Schemas/STD/2007-06/index.html

    r162 r189  
    3131<h2>Schema</h2> 
    3232<p>The schema XSD file is <a href="STD.xsd">STD.xsd</a>.</p> 
     33<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    3334</div> 
    3435<hr/> 

  • Schemas/STD/2008-02/index.html

    r149 r189  
    3131<h2>Schema</h2> 
    3232<p>The schema XSD file is <a href="STD.xsd">STD.xsd</a>.</p> 
     33<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    3334</div> 
    3435<hr/> 

  • Schemas/index.html

    r176 r189  
    5353        <li>STD - February 2008 Version 1 [<a href="STD/2008-02/STD.xsd">STD.xsd</a>] The Semantic Type definition schema. Once a Semantic Type is defined, data for the defined type can be imported into the OME server.</li> 
    5454</ul> 
     55<p>Note: Some browsers will try to render XSD files when you view them. This can result in either a blank screen or unformatted text. Choose to either download the file or view the source.</p> 
    5556</div> 
    5657<hr/> 

  • Xml/Working/SPW.xsd

    r153 r189  
    276276                A Well is a component of the Well/Plate/Screen construct to describe screening applications. 
    277277                A Well has a number of WellSample elements that link to the Images collected in this well. 
    278                                 The ReagentRef links any Reagents that were used in this Well. A well is part of one or more Plates. 
     278                                The ReagentRef links any Reagents that were used in this Well. A well is part of only one Plate. 
    279279                                The origin for the row and column identifiers is the top left corner of the plate starting at zero. 
    280280                                i.e The top left well of a plate is index (0,0) 

  • Xml/Working/STD.xsd

    r153 r189  
    8787                        <attribute name = "AppliesTo" use = "required"> 
    8888                                <annotation> 
    89                                         <documentation>This specifies what this record is an attribute of. The options are Global, Dataset, Image, or Region. 
     89                                        <documentation>This specifies what this record is an attribute of. The options are Global, Dataset, Image, or Region (was called Feature hence letter F). 
    9090                                        </documentation> 
    9191                                </annotation> 

  • Xml/Working/min-sample.xml

    r147 r189  
    55 xsi:schemaLocation="http://www.openmicroscopy.org/Schemas/OME/2008-02 http://www.openmicroscopy.org/Schemas/OME/2008-02/ome.xsd"> 
    66    <ome:Image ID="Image:a" Name="Name92" DefaultPixels="Pixels:b"> 
    7         <ome:CreationDate>2006-05-04T18:13:51.0Z</ome:CreationDate> 
     7        <ome:CreationDate>2008-03-04T14:17:43.0Z</ome:CreationDate> 
    88        <ome:Pixels ID="Pixels:a" DimensionOrder="XYZCT" PixelType="int8" BigEndian="false" SizeX="2" SizeY="2" SizeZ="2" 
    99             SizeC="2" SizeT="2"> 

  • Xml/Working/ome.xsd

    r164 r189  
    2525        xmlns:SPW="http://www.openmicroscopy.org/Schemas/SPW/2008-02"  
    2626        xmlns:xml="http://www.w3.org/XML/1998/namespace" 
    27         version="1"  
     27        version="2"  
    2828        elementFormDefault="qualified"> 
    2929        <xsd:import namespace="http://www.openmicroscopy.org/Schemas/AnalysisModule/2008-02" schemaLocation="http://www.openmicroscopy.org/Schemas/AnalysisModule/2008-02/AnalysisModule.xsd"/> 
    … …  
    3636                <xsd:documentation> 
    3737                        Open Microscopy Environment 
    38                         OME XML Schema February 2008 - Version 1 
     38                        OME XML Schema February 2008 - Update Version 2 May 2008 
    3939                        Author:  Ilya G. Goldberg, Andrew J Patterson 
    4040                        Copyright 2002 - 2008 OME. All rights reserved. 
    … …  
    9595                                <xsd:element ref="DatasetRef" minOccurs="0" maxOccurs="unbounded"/> 
    9696                                <xsd:element ref="InstrumentRef" minOccurs="0"/> 
    97                                 <xsd:element ref="ObjectiveSettingsRef" minOccurs="0"/> 
     97                                <xsd:element ref="ObjectiveRef" minOccurs="0"/> 
    9898                                <xsd:element ref="ImagingEnvironment" minOccurs="0"/> 
    9999                                <xsd:element ref="Thumbnail" minOccurs="0"/> 
    … …  
    806806                        <xsd:documentation> 
    807807                                A description of the microscope's objective lens. 
    808                                 Required elements include the lens numerical aperture, and the magnification, both of which a floating point (real) numbers. 
     808                                Required elements include the lens numerical aperture,  
     809                                and the magnification, both of which a floating  
     810                                point (real) numbers. 
     811                                The values are those that are fixed for a particular  
     812                                objective: either because it has been manufactured to  
     813                                this specification or the value has been measured on  
     814                                this particular objective. 
     815                                Correction: This is the type of correction coating applied to this lens. 
     816                                Immersion: This is the types of immersion medium the lens is designed to 
     817                                work with. It is not the same as 'Medium' in ObjectiveRef (a  
     818                                single type) as here Immersion can have compound values like 'Multi'. 
     819                                LensNA: The numerical aperture of the lens (as a float) 
     820                                NominalMagnification: The specified magnification e.g. x10 
     821                                CalibratedMagnification: The measured magnification e.g. x10.3 
     822                                WorkingDistance: WorkingDistance of the lense. The Units are um. 
    809823                        </xsd:documentation> 
    810824                </xsd:annotation> 
    … …  
    827841                </xsd:complexType> 
    828842        </xsd:element> 
    829         <xsd:element name="ObjectiveSettings"> 
    830                 <xsd:annotation> 
    831                         <xsd:documentation> 
    832                                 A description of the user settings on a microscope's objective lens. 
    833                         </xsd:documentation> 
    834                 </xsd:annotation> 
    835                 <xsd:complexType> 
    836                         <xsd:sequence> 
    837                                 <xsd:element ref="ObjectiveRef"/> 
    838                         </xsd:sequence> 
    839                         <xsd:attribute name="CorrectionCollar" type="xsd:float"/> 
    840                         <xsd:attribute name="Medium" type="Medium"/> 
    841                         <xsd:attribute name="RefractiveIndex" type="xsd:float"/> 
    842                 </xsd:complexType> 
    843         </xsd:element> 
    844843        <xsd:simpleType name="Medium"> 
    845844                <xsd:annotation> 
    846845                        <xsd:documentation> 
    847                                 A description of a Medium used either for the sample or the lens. 
     846                                A description of a Medium used for the lens. 
    848847                        </xsd:documentation> 
    849848                </xsd:annotation> 
    … …  
    12621261                </xsd:restriction> 
    12631262        </xsd:simpleType> 
    1264         <xsd:simpleType name="ObjectiveSettingsID"> 
    1265                 <xsd:restriction base="LSID"> 
    1266                         <xsd:pattern value="(urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:ObjectiveSettings:\S+)|(ObjectiveSettings:\S+)"/> 
    1267                 </xsd:restriction> 
    1268         </xsd:simpleType> 
    12691263        <xsd:simpleType name="LightSourceID"> 
    12701264                <xsd:restriction base="LSID"> 
    … …  
    18311825        </xsd:element> 
    18321826        <xsd:element name="ObjectiveRef"> 
     1827                <xsd:annotation> 
     1828                        <xsd:documentation>  
     1829                                This holds the setting applied to an objective as well as a 
     1830                                reference to the objective.  
     1831                                The ID is the objective used in this case. 
     1832                                The CorrectionCollar is it normal an adjustable ring on the  
     1833                                objective. Each has an arbitrary scale on it so the values  
     1834                                is unit-less. 
     1835                                The Medium is the actual immersion medium used in this case. 
     1836                                The RefractiveIndex is that of the immersion medium. This is 
     1837                                a ratio so it also unit-less. 
     1838                        </xsd:documentation> 
     1839                </xsd:annotation> 
    18331840                <xsd:complexType> 
    18341841                        <xsd:complexContent> 
    … …  
    18401847                                                <xsd:annotation><xsd:documentation>This is unit-less, it is a ratio.</xsd:documentation></xsd:annotation> 
    18411848                                        </xsd:attribute> 
    1842                                 </xsd:extension> 
    1843                         </xsd:complexContent> 
    1844                 </xsd:complexType> 
    1845         </xsd:element> 
    1846         <xsd:element name="ObjectiveSettingsRef"> 
    1847                 <xsd:complexType> 
    1848                         <xsd:complexContent> 
    1849                                 <xsd:extension base="Reference"> 
    1850                                         <xsd:attribute name="ID" use="required" type="ObjectiveSettingsID"/> 
    18511849                                </xsd:extension> 
    18521850                        </xsd:complexContent> 

  • Xml/Working/omeOxySvnProject.xpr

    r152 r189  
    1818        <file name="min-sample.xml"/> 
    1919        <file name="MLI.xsd"/> 
     20        <file name="objective-sample.xml"/> 
    2021        <file name="ome.xsd"/> 
    2122        <file name="sample-updated.ome.xml"/> 

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